Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005177.1 Corchorus capsularis cultivar CVL-1 contig05195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5425

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1614--1638
13
1.9
13
100
0
50
40
8
20
32
1.81
2105--2197
34
2.8
33
86
3
132
46
6
20
26
1.75
2105--2179
33
2.2
33
95
2
132
48
5
18
28
1.70
2355--2490
8
18.9
7
71
22
79
45
5
22
26
1.75
2369--2483
14
8.1
14
73
19
78
46
6
21
26
1.75
2348--2546
22
9.2
22
79
6
210
44
5
21
28
1.75
2348--2546
86
2.3
86
85
3
267
44
5
21
28
1.75
2433--2548
36
3.5
35
71
18
111
43
5
21
29
1.74
2354--2547
64
3.0
67
87
5
249
44
5
21
27
1.75
2576--2625
22
2.3
22
85
0
64
40
8
22
30
1.82
2613--2684
36
2.0
36
91
0
117
44
4
19
31
1.70
2610--2662
14
3.6
14
82
5
61
47
5
16
30
1.70
2717--2750
18
2.0
16
88
11
50
47
5
23
23
1.73
3766--3813
24
1.9
24
83
8
60
14
16
2
66
1.34
3802--3871
27
2.6
27
80
14
74
15
24
0
60
1.36
3918--4087
14
12.4
14
66
19
65
21
22
5
50
1.70
3932--4012
21
3.9
20
78
10
74
24
23
6
45
1.75
4082--4149
26
2.6
27
81
6
68
26
19
4
50
1.66
4122--4191
32
2.2
32
87
7
97
22
18
5
52
1.66
4181--4236
16
3.1
17
72
22
60
17
25
3
53
1.60
4227--4302
40
1.9
40
94
0
134
21
23
5
50
1.69
4362--4388
14
1.9
14
100
0
54
7
14
3
74
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4349--4421
36
2.0
36
97
0
137
12
16
5
65
1.43
4275--4447
16
10.9
16
68
18
103
16
20
6
56
1.63
4349--4430
36
2.5
32
86
11
105
13
17
6
63
1.49
4238--4513
110
2.4
115
80
7
337
18
20
6
54
1.66
4494--4598
45
2.3
47
85
5
133
29
17
7
45
1.76
4622--4694
32
2.3
31
81
6
83
21
26
6
45
1.77
4688--4781
38
2.4
39
82
3
109
22
21
6
50
1.71

Tables:   1

The End!