Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005179.1 Corchorus capsularis cultivar CVL-1 contig05197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6050
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38


Found at i:4830 original size:36 final size:36

Alignment explanation


    Indices: 4783--4872  Score: 162
    Period size: 36  Copynumber: 2.5  Consensus size: 36

       4773 TTAGCCAAAT

                                 *              
       4783 CATAATCAACAGCTTTGACATTAATTTGTCGTTTAG
          1 CATAATCAACAGCTTTGACATCAATTTGTCGTTTAG

                 *                              
       4819 CATAACCAACAGCTTTGACATCAATTTGTCGTTTAG
          1 CATAATCAACAGCTTTGACATCAATTTGTCGTTTAG

                              
       4855 CATAATCAACAGCTTTGA
          1 CATAATCAACAGCTTTGA

       4873 GCCTTTGTTC


Statistics
Matches: 51,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   51  1.00

ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34


Consensus pattern (36 bp):   
CATAATCAACAGCTTTGACATCAATTTGTCGTTTAG
Done.