Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005190.1 Corchorus capsularis cultivar CVL-1 contig05208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16917

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2772--2934
31
5.4
30
68
16
122
26
19
19
33
1.96
2802--2901
29
3.4
29
71
15
105
25
20
22
33
1.97
2772--2940
60
2.8
60
93
1
286
27
20
18
33
1.96
4630--4767
74
1.9
74
86
7
199
39
11
19
28
1.87
5605--5962
179
2.0
179
98
0
689
29
24
12
33
1.92
6677--6732
28
2.0
28
96
0
103
16
35
23
25
1.94
8548--8584
18
2.1
18
100
0
74
5
35
10
48
1.61
10297--10365
34
2.0
34
100
0
138
37
21
14
26
1.92
12515--12578
30
2.1
31
94
2
112
25
10
23
40
1.87
13586--13625
10
3.8
10
81
12
53
17
17
0
65
1.28
13584--13629
22
2.1
22
100
0
92
23
19
0
56
1.42
13940--14007
12
5.5
12
93
6
118
35
16
23
25
1.95
13940--14007
25
2.7
25
100
0
136
35
16
23
25
1.95
14170--14195
10
2.6
10
100
0
52
7
0
0
92
0.39
14998--15033
10
3.6
10
92
0
63
30
5
22
41
1.76
14995--15033
20
2.0
20
100
0
78
30
5
20
43
1.73
16071--16533
157
3.0
157
94
4
847
40
16
10
31
1.83
16236--16532
147
2.0
147
99
0
585
41
16
10
31
1.82

Tables:   1

The End!