Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005191.1 Corchorus capsularis cultivar CVL-1 contig05209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40062

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111--155
18
2.4
18
81
7
54
55
8
0
35
1.31
514--548
14
2.5
14
80
0
52
20
11
5
62
1.48
4303--4335
17
1.9
17
93
0
57
57
9
12
21
1.62
6808--6834
14
1.9
14
100
0
54
29
7
3
59
1.42
11547--11600
17
3.3
16
75
21
51
1
11
14
72
1.21
22453--22495
20
2.0
20
86
8
59
41
25
13
18
1.88
22777--22844
10
6.7
10
78
9
75
29
2
17
50
1.61
22791--22844
21
2.6
21
85
8
74
29
1
16
51
1.55
22777--22844
31
2.2
30
86
2
91
29
2
17
50
1.61
23193--23317
9
15.6
9
63
25
57
9
19
35
36
1.84
23192--23388
16
12.6
16
75
11
140
10
19
34
36
1.86
23194--23357
48
3.4
46
81
6
168
10
18
34
35
1.85
28527--28555
13
2.2
13
100
0
58
34
13
6
44
1.71
37887--37937
23
2.3
22
86
3
66
3
25
1
68
1.17
37919--37952
12
2.9
12
91
4
52
0
11
0
88
0.52
38873--39305
214
2.0
214
99
0
857
38
15
21
24
1.92

Tables:   1

The End!