Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005194.1 Corchorus capsularis cultivar CVL-1 contig05212, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2439
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Found at i:633 original size:22 final size:21

Alignment explanation


    Indices: 603--646  Score: 70
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        593 TTGCCATGTA

                           *     
        603 ATTTATGATTGTATTCTTGGT
          1 ATTTATGATTGTATTATTGGT

                                  
        624 ATTTAATGATTGTATTATTGGT
          1 ATTT-ATGATTGTATTATTGGT

             
        646 A
          1 A

        647 AATTTTTTTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  21    4  0.19
  22   17  0.81

ACGTcount: A:0.25, C:0.02, G:0.18, T:0.55


Consensus pattern (21 bp):   
ATTTATGATTGTATTATTGGT
Done.