Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000520.1 Corchorus capsularis cultivar CVL-1 contig00520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4722
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:4570 original size:20 final size:20

Alignment explanation


    Indices: 4530--4578  Score: 64
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       4520 AGAATGTAAG

                                 
       4530 ATATTACTAAATTTATTAATA
          1 ATATTA-TAAATTTATTAATA

                                 
       4551 ATATTATAACATTT-TTAATA
          1 ATATTATAA-ATTTATTAATA

              *     
       4571 ATTTTATA
          1 ATATTATA

       4579 CCTTTTGAAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  20   16  0.62
  21   10  0.38

ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51


Consensus pattern (20 bp):   
ATATTATAAATTTATTAATA
Done.