Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005200.1 Corchorus capsularis cultivar CVL-1 contig05218, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2159
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28


Found at i:2037 original size:33 final size:33

Alignment explanation


    Indices: 2000--2106  Score: 110
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       1990 GCCCAATCGA

                                  *          * 
       2000 TGGCCGGTTG-TGGCCGGACATGTCC-ATGTCGTG
          1 TGGCCGG-TGATGGCCGGACATCTCCGA-GTCGCG

                             *               
       2033 TGGCCGGTGATGGCCGGGCATCTCCGAGTCGCG
          1 TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG

                     *       * *     *      *
       2066 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
          1 TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG

                    
       2099 TGGCCGGT
          1 TGGCCGGT

       2107 CACTCGCGCC


Statistics
Matches: 65,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  32    2  0.03
  33   62  0.95
  34    1  0.02

ACGTcount: A:0.08, C:0.28, G:0.40, T:0.23


Consensus pattern (33 bp):   
TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG
Done.