Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005203.1 Corchorus capsularis cultivar CVL-1 contig05221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1786
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:210 original size:30 final size:30

Alignment explanation


    Indices: 174--236  Score: 101
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        164 TCTTCAAGGG

                       *                   
        174 GGAGGGAATGATGCGCCCAAGGA-TTATCAT
          1 GGAGGGAATGAAGCG-CCAAGGACTTATCAT

                                          
        204 GGAGGGAATGAAGCGCCAAGGACTTATCAT
          1 GGAGGGAATGAAGCGCCAAGGACTTATCAT

               
        234 GGA
          1 GGA

        237 CTTGAAGACA


Statistics
Matches: 31,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  29    7  0.23
  30   24  0.77

ACGTcount: A:0.32, C:0.16, G:0.35, T:0.17


Consensus pattern (30 bp):   
GGAGGGAATGAAGCGCCAAGGACTTATCAT
Done.