Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005209.1 Corchorus capsularis cultivar CVL-1 contig05227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7868

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3496--3596
29
3.4
29
79
4
94
16
28
17
36
1.92
3525--3597
29
2.5
29
84
2
101
16
31
17
34
1.93
3760--3866
29
3.6
29
82
6
108
36
14
29
18
1.91
4402--4428
2
13.5
2
100
0
54
48
0
0
51
1.00
4767--4816
23
2.2
22
89
10
75
56
12
6
26
1.58
5113--5148
15
2.4
15
90
9
56
52
2
0
44
1.15
5106--5138
17
1.9
17
93
0
57
51
0
0
48
1.00
5106--5138
2
17.5
2
87
12
52
51
0
0
48
1.00
5110--5140
11
2.9
11
95
4
55
51
0
0
48
1.00
6565--6606
20
2.1
21
86
8
61
28
7
7
57
1.52
7221--7295
27
2.8
27
85
0
105
16
16
26
41
1.88

Tables:   1

The End!