Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005213.1 Corchorus capsularis cultivar CVL-1 contig05231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3391
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:3208 original size:15 final size:15

Alignment explanation


    Indices: 3166--3208  Score: 50
    Period size: 15  Copynumber: 2.9  Consensus size: 15

       3156 GCGTTGCTCT

                *       *  
       3166 CAGCCCCCATGTCGC
          1 CAGCACCCATGTGGC

            *   *          
       3181 TAGCGCCCATGTGGC
          1 CAGCACCCATGTGGC

                         
       3196 CAGCACCCATGTG
          1 CAGCACCCATGTG

       3209 CTTGCTGGTG


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.16, C:0.42, G:0.26, T:0.16


Consensus pattern (15 bp):   
CAGCACCCATGTGGC
Done.