Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005216.1 Corchorus capsularis cultivar CVL-1 contig05234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2275
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37


Found at i:2183 original size:23 final size:23

Alignment explanation


    Indices: 2149--2196  Score: 62
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       2139 CTCTTGTTGA

                         **        
       2149 TTACCTTCTTACTTTTTACTATT
          1 TTACCTTCTTACTGATTACTATT

                                    
       2172 TTACTCTT-TTACTGATTACTATT
          1 TTAC-CTTCTTACTGATTACTATT

              
       2195 TT
          1 TT

       2197 CTGCTCCCTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  23   19  0.86
  24    3  0.14

ACGTcount: A:0.19, C:0.19, G:0.02, T:0.60


Consensus pattern (23 bp):   
TTACCTTCTTACTGATTACTATT
Done.