Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005222.1 Corchorus capsularis cultivar CVL-1 contig05240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4399
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Found at i:4331 original size:27 final size:27

Alignment explanation


    Indices: 4293--4346  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       4283 CATATGTCAA

                                       
       4293 CCCTTAAACCCCGCACGTGCAGTTTGC
          1 CCCTTAAACCCCGCACGTGCAGTTTGC

                                       
       4320 CCCTTAAACCCCGCACGTGCAGTTTGC
          1 CCCTTAAACCCCGCACGTGCAGTTTGC

       4347 TAAAATCCAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.19, C:0.41, G:0.19, T:0.22


Consensus pattern (27 bp):   
CCCTTAAACCCCGCACGTGCAGTTTGC
Done.