Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005223.1 Corchorus capsularis cultivar CVL-1 contig05241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8088

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
694--780
29
3.0
27
80
11
84
39
12
26
21
1.89
706--780
29
2.6
28
83
10
89
40
12
26
21
1.88
1005--1036
2
16.0
2
100
0
64
50
0
0
50
1.00
1974--2227
22
11.6
23
74
12
137
42
9
13
33
1.78
2035--2138
45
2.4
45
82
8
124
42
9
12
35
1.76
1974--2199
67
3.4
65
78
11
178
42
9
14
34
1.78
2303--2442
66
2.2
64
79
10
142
43
8
15
32
1.77
2470--2528
25
2.4
25
86
5
77
42
3
10
44
1.55
2346--2842
22
22.6
22
66
14
109
39
9
14
35
1.79
3118--3183
31
2.1
31
88
5
98
25
21
6
46
1.74
3500--3536
19
1.9
19
89
10
58
29
5
0
64
1.15
3703--3789
22
4.0
21
75
7
84
36
10
17
35
1.84
3711--3841
22
5.9
22
75
14
83
32
8
19
39
1.81
3950--4004
22
2.5
22
80
8
60
38
5
18
38
1.74
4056--4257
22
9.0
23
71
13
84
40
8
15
35
1.78
4368--4405
19
2.0
20
84
5
51
44
7
21
26
1.79
4407--4853
22
20.5
21
69
17
157
38
9
14
37
1.79
4407--4880
44
10.8
44
72
12
246
38
9
15
36
1.80
4598--4649
23
2.3
23
82
0
68
38
5
17
38
1.74
4751--4836
45
1.9
45
83
4
111
33
11
16
38
1.85
4914--4967
22
2.5
22
87
0
72
42
9
9
38
1.69
5230--5273
21
2.1
21
91
0
70
13
15
25
45
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7092--7116
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!