Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005224.1 Corchorus capsularis cultivar CVL-1 contig05242, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3276
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:2640 original size:20 final size:20

Alignment explanation


    Indices: 2604--2642  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2594 AAATACAAGG

                        *       
       2604 CATTTGATTTACGAATTGGA
          1 CATTTGATTTACAAATTGGA

                      *        
       2624 CATTTGATTTGCAAATTGG
          1 CATTTGATTTACAAATTGG

       2643 TGCCCTTTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41


Consensus pattern (20 bp):   
CATTTGATTTACAAATTGGA
Done.