Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005229.1 Corchorus capsularis cultivar CVL-1 contig05247, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2514
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:244 original size:15 final size:15

Alignment explanation


    Indices: 224--257  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        214 AAAACAACTT

                            
        224 ATAAAACAAGTTA-TA
          1 ATAAAACAA-TTAGTA

                           
        239 ATAAAACAATTAGTA
          1 ATAAAACAATTAGTA

                
        254 ATAA
          1 ATAA

        258 TAAATCCAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    3  0.17
  15   15  0.83

ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26


Consensus pattern (15 bp):   
ATAAAACAATTAGTA

Found at i:1832 original size:16 final size:15

Alignment explanation


    Indices: 1807--1837  Score: 53
    Period size: 16  Copynumber: 2.0  Consensus size: 15

       1797 TTTTTTTTTT

                           
       1807 GAACCGGCTCGGCTC
          1 GAACCGGCTCGGCTC

                            
       1822 GAACGCGGCTCGGCTC
          1 GAAC-CGGCTCGGCTC

       1838 AAGCCGGTTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    4  0.27
  16   11  0.73

ACGTcount: A:0.13, C:0.39, G:0.35, T:0.13


Consensus pattern (15 bp):   
GAACCGGCTCGGCTC
Done.