Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005234.1 Corchorus capsularis cultivar CVL-1 contig05252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6143
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30


Found at i:499 original size:13 final size:12

Alignment explanation


    Indices: 481--516  Score: 54
    Period size: 13  Copynumber: 2.8  Consensus size: 12

        471 AATCAAGGTC

                         
        481 ATAAACCAAAGTA
          1 ATAAACCAAA-TA

                         
        494 ATAAACCAGAATA
          1 ATAAACCA-AATA

                      
        507 ATAAACCAAA
          1 ATAAACCAAA

        517 ACAGTCATAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  12    2  0.09
  13   18  0.82
  14    2  0.09

ACGTcount: A:0.64, C:0.17, G:0.06, T:0.14


Consensus pattern (12 bp):   
ATAAACCAAATA
Done.