Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005235.1 Corchorus capsularis cultivar CVL-1 contig05253, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6179
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:5072 original size:3 final size:3

Alignment explanation


    Indices: 5064--5104  Score: 55
    Period size: 3  Copynumber: 13.3  Consensus size: 3

       5054 AGTATAGTGG

                                  *  *                            
       5064 TTA TTA TTA TTA TTA TGGA GTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T

       5105 ATACTTTTTT


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
   3   32  0.97
   4    1  0.03

ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61


Consensus pattern (3 bp):   
TTA

Done.