Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000524.1 Corchorus capsularis cultivar CVL-1 contig00524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8062
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:2169 original size:18 final size:18

Alignment explanation


    Indices: 2146--2182  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2136 ACATTATCAA

                              
       2146 TATCCTCATCATCATTAT
          1 TATCCTCATCATCATTAT

                     *  *     
       2164 TATCCTCATTATTATTAT
          1 TATCCTCATCATCATTAT

             
       2182 T
          1 T

       2183 TCTCCTGTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51


Consensus pattern (18 bp):   
TATCCTCATCATCATTAT

Found at i:4691 original size:6 final size:6

Alignment explanation


    Indices: 4680--4709  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       4670 ATAAAAATGA

                                              
       4680 TCATCT TCATCT TCATCT TCATCT TCATCT
          1 TCATCT TCATCT TCATCT TCATCT TCATCT

       4710 CTTTTTAATG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50


Consensus pattern (6 bp):   
TCATCT

Done.