Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005250.1 Corchorus capsularis cultivar CVL-1 contig05268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3736
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31


Found at i:1795 original size:11 final size:11

Alignment explanation


    Indices: 1779--1808  Score: 60
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       1769 CTAACACGTT

                       
       1779 TGTCACAAATC
          1 TGTCACAAATC

                       
       1790 TGTCACAAATC
          1 TGTCACAAATC

                    
       1801 TGTCACAA
          1 TGTCACAA

       1809 CTTAGTGACA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27


Consensus pattern (11 bp):   
TGTCACAAATC
Done.