Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005251.1 Corchorus capsularis cultivar CVL-1 contig05269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8217

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5025--5176
73
2.1
73
97
1
288
33
12
25
28
1.92
5737--5780
10
4.3
10
82
5
52
84
0
13
2
0.73
5736--5771
17
2.1
17
89
0
54
83
0
13
2
0.76
5744--5781
10
3.6
11
86
10
53
81
0
18
0
0.69
5791--5849
19
3.5
19
70
29
69
38
10
16
33
1.83
5808--5832
12
2.1
12
100
0
50
40
8
20
32
1.81
5791--5855
31
2.1
30
97
2
121
35
9
18
36
1.83
5815--5970
44
3.4
44
81
14
188
39
8
17
35
1.80
6662--6705
4
10.8
4
87
7
54
81
0
18
0
0.68
6650--6706
5
12.0
5
76
14
50
82
0
15
1
0.75
7831--7936
36
3.0
36
72
9
110
16
15
25
42
1.87
7816--7922
35
3.0
35
71
5
99
14
16
24
43
1.86
7895--8014
49
2.4
48
93
5
204
20
23
23
33
1.97
7965--8154
71
2.7
69
91
1
290
22
17
22
37
1.94
7965--8157
69
2.7
71
91
1
300
22
17
22
37
1.94
8105--8207
49
2.1
50
85
1
136
21
17
23
37
1.94

Tables:   1

The End!