Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005258.1 Corchorus capsularis cultivar CVL-1 contig05276, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11331

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
790--1820
436
2.4
432
81
6
1184
44
12
12
30
1.79
3117--3156
21
1.9
21
94
0
71
10
37
12
40
1.77
3628--3698
35
2.1
34
89
7
108
28
5
16
49
1.69
4267--4314
24
2.0
24
84
8
62
25
14
6
54
1.63
5083--5668
228
2.6
227
92
0
958
35
16
13
35
1.88
5973--6022
8
5.6
9
83
11
59
42
2
0
56
1.11
5975--6019
2
23.5
2
80
17
51
42
2
0
55
1.12
5975--6019
15
3.1
15
84
9
58
42
2
0
55
1.12
7343--7383
21
2.0
21
95
0
73
21
14
31
31
1.94
7531--7563
17
1.9
17
100
0
66
27
6
36
30
1.81
11159--11213
21
2.7
21
80
8
60
21
20
18
40
1.92

Tables:   1

The End!