Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005264.1 Corchorus capsularis cultivar CVL-1 contig05282, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2227
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:2078 original size:19 final size:20

Alignment explanation


    Indices: 2056--2124  Score: 70
    Period size: 19  Copynumber: 3.5  Consensus size: 20

       2046 TTATAGGTAA

                     *          
       2056 CAGAGC-AACCTATAAGCAT
          1 CAGAGCTAAACTATAAGCAT

                       *  *      
       2075 CAGAGCTATAAATAAAAGCAT
          1 CAGAGCTA-AACTATAAGCAT

                     *          
       2096 CAGAGCTAATC-ATAAGCAT
          1 CAGAGCTAAACTATAAGCAT

            *         
       2115 TAGAGCTAAA
          1 CAGAGCTAAA

       2125 AGATATCAGA


Statistics
Matches: 40,  Mismatches: 8, Indels: 4
        0.77            0.15        0.08

Matches are distributed among these distances:
  19   21  0.52
  20    2  0.05
  21   17  0.43

ACGTcount: A:0.46, C:0.19, G:0.16, T:0.19


Consensus pattern (20 bp):   
CAGAGCTAAACTATAAGCAT

Done.