Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005277.1 Corchorus capsularis cultivar CVL-1 contig05295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1957
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1623 original size:25 final size:22

Alignment explanation


    Indices: 1595--1645  Score: 57
    Period size: 25  Copynumber: 2.1  Consensus size: 22

       1585 TTAGATTTAG

                                     
       1595 ATTTAGATTTAATTTGTTTTGCTTT
          1 ATTTAG-TTTAA-TTGTTTT-CTTT

                                    
       1620 ATTTTTAGTTTAATTGTTTTCTTT
          1 A--TTTAGTTTAATTGTTTTCTTT

              
       1644 AT
          1 AT

       1646 AAATTGATAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 7
        0.77            0.00        0.23

Matches are distributed among these distances:
  22    1  0.04
  24    5  0.21
  25    8  0.33
  26    5  0.21
  27    5  0.21

ACGTcount: A:0.20, C:0.04, G:0.10, T:0.67


Consensus pattern (22 bp):   
ATTTAGTTTAATTGTTTTCTTT
Done.