Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005282.1 Corchorus capsularis cultivar CVL-1 contig05300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2953
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31


Found at i:214 original size:32 final size:34

Alignment explanation


    Indices: 148--215  Score: 95
    Period size: 34  Copynumber: 2.1  Consensus size: 34

        138 CTTACGATGC

                                              
        148 TTAAAAATAAAATCCTAAATCTAGAAAACATAAA
          1 TTAAAAATAAAATCCTAAATCTAGAAAACATAAA

                  *               *      *    
        182 TTAAAATTAAAATCCT-AAT-TTGAAAACCTAAA
          1 TTAAAAATAAAATCCTAAATCTAGAAAACATAAA

              
        214 TT
          1 TT

        216 GGTTTAGGAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  32   13  0.42
  33    3  0.10
  34   15  0.48

ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29


Consensus pattern (34 bp):   
TTAAAAATAAAATCCTAAATCTAGAAAACATAAA
Done.