Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005283.1 Corchorus capsularis cultivar CVL-1 contig05301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3301
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:777 original size:31 final size:31

Alignment explanation


    Indices: 742--806  Score: 112
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        732 TTGGGTTATC

                  *                        
        742 AGTCTCGAAATCTTTAGATCTTGGATGTTTG
          1 AGTCTCCAAATCTTTAGATCTTGGATGTTTG

                    *                      
        773 AGTCTCCAGATCTTTAGATCTTGGATGTTTG
          1 AGTCTCCAAATCTTTAGATCTTGGATGTTTG

               
        804 AGT
          1 AGT

        807 TAGTTCAGTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.22, C:0.14, G:0.23, T:0.42


Consensus pattern (31 bp):   
AGTCTCCAAATCTTTAGATCTTGGATGTTTG

Found at i:1486 original size:2 final size:2

Alignment explanation


    Indices: 1479--1505  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       1469 ATATAGTAAT

                                                    
       1479 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1506 TATTCAAATC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.