Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005284.1 Corchorus capsularis cultivar CVL-1 contig05302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6373

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3772--3830
15
3.8
16
76
8
50
52
6
18
22
1.68
3691--3790
40
2.5
42
87
9
145
51
6
20
23
1.69
3799--3844
22
2.1
22
91
0
74
54
6
17
21
1.65
3832--3951
28
4.5
27
65
18
72
53
5
19
22
1.64
3782--3957
35
4.7
35
74
18
133
52
5
19
22
1.65
3855--3922
22
3.1
22
79
8
77
50
5
20
23
1.70
3799--4150
78
4.5
78
80
12
364
52
5
20
21
1.67
3933--4086
22
7.1
22
78
8
147
51
6
21
20
1.70
4023--4115
7
12.7
7
69
7
51
55
3
19
21
1.56
3933--4086
42
3.6
43
85
6
179
51
6
21
20
1.70
4074--4124
22
2.3
22
86
6
68
58
3
15
21
1.53
4016--4107
44
2.1
44
85
2
132
53
4
20
21
1.63
4045--4115
29
2.4
29
86
9
92
56
2
19
21
1.55
4085--4132
22
2.2
22
88
3
71
60
6
14
18
1.55
5817--5843
4
6.8
4
100
0
54
77
0
0
22
0.76
6343--6373
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!