Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000529.1 Corchorus capsularis cultivar CVL-1 contig00529, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 985

Length: 1642
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.41

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:749 original size:29 final size:29

Alignment explanation


    Indices: 716--777  Score: 97
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        706 CAAACTAAAT

                           *          *  
        716 AATTATGTAACACGTTTATTGGTAGATGG
          1 AATTATGTAACACGTATATTGGTAGACGG

                     *                   
        745 AATTATGTAGCACGTATATTGGTAGACGG
          1 AATTATGTAACACGTATATTGGTAGACGG

                
        774 AATT
          1 AATT

        778 TTAATGATTA


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35


Consensus pattern (29 bp):   
AATTATGTAACACGTATATTGGTAGACGG

Found at i:829 original size:2 final size:2

Alignment explanation


    Indices: 822--857  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

        812 CCTAATACTG

                                                         *       
        822 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        858 GATCATATTG


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.