Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005290.1 Corchorus capsularis cultivar CVL-1 contig05308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1880
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.34


Found at i:859 original size:24 final size:24

Alignment explanation


    Indices: 832--885  Score: 99
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        822 ATAATCACGC

                                    
        832 TACTAGGCTTCCCATTCGCATACA
          1 TACTAGGCTTCCCATTCGCATACA

                                    
        856 TACTAGGCTTCCCATTCGCATACA
          1 TACTAGGCTTCCCATTCGCATACA

             *    
        880 TCCTAG
          1 TACTAG

        886 TATGAAACAA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30


Consensus pattern (24 bp):   
TACTAGGCTTCCCATTCGCATACA
Done.