Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005295.1 Corchorus capsularis cultivar CVL-1 contig05313, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6141

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1559--1598
5
7.8
5
94
5
71
77
0
0
22
0.77
1758--1787
3
10.3
3
92
7
53
63
0
0
36
0.95
3078--3173
13
7.3
13
68
29
62
15
14
42
27
1.86
3054--3174
53
2.3
52
90
4
181
16
14
39
28
1.88
3054--3174
26
4.6
26
83
8
156
16
14
39
28
1.88
3215--3243
15
1.9
15
100
0
58
13
24
48
13
1.79
3641--3725
28
3.2
28
61
16
72
22
21
34
22
1.97
3630--3774
51
2.8
51
89
2
211
20
24
32
22
1.98
3803--3837
15
2.4
15
85
4
54
31
2
5
60
1.35
3983--4090
37
2.9
37
87
1
162
20
22
27
29
1.98
4475--4503
6
4.8
6
100
0
58
13
0
0
86
0.58
5048--5156
50
2.2
51
80
8
125
12
25
24
36
1.91
5059--5175
50
2.3
50
82
2
128
11
23
24
40
1.88
5621--6141
44
11.9
43
91
2
702
12
16
24
46
1.81

Tables:   1

The End!