Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005304.1 Corchorus capsularis cultivar CVL-1 contig05322, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1501
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.34


Found at i:122 original size:19 final size:19

Alignment explanation


    Indices: 98--136  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

         88 ATTACTTGAG

                               
         98 TGGCTCTCTTTCCGTCGAT
          1 TGGCTCTCTTTCCGTCGAT

                               
        117 TGGCTCTCTTTCCGTCGAT
          1 TGGCTCTCTTTCCGTCGAT

             
        136 T
          1 T

        137 TCCCTTTGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.05, C:0.31, G:0.21, T:0.44


Consensus pattern (19 bp):   
TGGCTCTCTTTCCGTCGAT
Done.