Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005306.1 Corchorus capsularis cultivar CVL-1 contig05324, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8320
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:4339 original size:19 final size:19

Alignment explanation


    Indices: 4315--4354  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       4305 GCCGGGGGCG

                           *   
       4315 GATCTTGACATATGAGTTT
          1 GATCTTGACATATGAATTT

                               
       4334 GATCTTGACATATGAATTT
          1 GATCTTGACATATGAATTT

              
       4353 GA
          1 GA

       4355 AGGGGCTATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40


Consensus pattern (19 bp):   
GATCTTGACATATGAATTT
Done.