Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005309.1 Corchorus capsularis cultivar CVL-1 contig05327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1998
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:768 original size:109 final size:109

Alignment explanation


    Indices: 644--848  Score: 347
    Period size: 109  Copynumber: 1.9  Consensus size: 109

        634 ACTACTCTGT

                                                                             
        644 TGTTTTTGGAAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAACCTTCGCGTCAGTCACGA
          1 TGTTTTTGGAAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAACCTTCGCGTCAGTCACGA

                      *              *                  
        709 ACCAAAATTATGAGTATGCAAAGCATCTTAATAAATTACTCCAC
         66 ACCAAAATTACGAGTATGCAAAGCACCTTAATAAATTACTCCAC

                     *        *                                           *  
        753 TGTTTTTGGTAAGTGGAGTACACGGGGTTCGGTATCACAAATATCAACCTTCGCGTCAGTCATGA
          1 TGTTTTTGGAAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAACCTTCGCGTCAGTCACGA

            *                    *         
        818 CCCAAAATTACGAGTATGCAAGGCACCTTAA
         66 ACCAAAATTACGAGTATGCAAAGCACCTTAA

        849 ATGTGTAAGT


Statistics
Matches: 89,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 109   89  1.00

ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Consensus pattern (109 bp):   
TGTTTTTGGAAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAACCTTCGCGTCAGTCACGA
ACCAAAATTACGAGTATGCAAAGCACCTTAATAAATTACTCCAC
Done.