Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000532.1 Corchorus capsularis cultivar CVL-1 contig00532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8748
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:8577 original size:21 final size:22

Alignment explanation


    Indices: 8551--8591  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       8541 TTTTTTCTTT

                                  
       8551 GTTTTTCAA-AAAAATCAAAGA
          1 GTTTTTCAATAAAAATCAAAGA

                  *             
       8572 GTTTTTGAATAAAAATCAAA
          1 GTTTTTCAATAAAAATCAAA

       8592 AATGGAAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21    8  0.44
  22   10  0.56

ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32


Consensus pattern (22 bp):   
GTTTTTCAATAAAAATCAAAGA

Found at i:8699 original size:14 final size:13

Alignment explanation


    Indices: 8681--8714  Score: 50
    Period size: 14  Copynumber: 2.5  Consensus size: 13

       8671 AAAAAAGTTC

                         
       8681 AAAAAAAATTTGG
          1 AAAAAAAATTTGG

                        * 
       8694 ATAAAAAAATTTTG
          1 A-AAAAAAATTTGG

                   
       8708 AAAAAAA
          1 AAAAAAA

       8715 GGAAAAATTG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  13    7  0.37
  14   12  0.63

ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24


Consensus pattern (13 bp):   
AAAAAAAATTTGG
Done.