Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005322.1 Corchorus capsularis cultivar CVL-1 contig05340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8485
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28


Found at i:3123 original size:17 final size:18

Alignment explanation


    Indices: 3096--3138  Score: 61
    Period size: 17  Copynumber: 2.4  Consensus size: 18

       3086 AACCTAAGTA

                *        *    
       3096 ATGCTAAATGCAAGCTAT
          1 ATGCAAAATGCAAACTAT

                              
       3114 ATG-AAAATGCAAACTAT
          1 ATGCAAAATGCAAACTAT

                    
       3131 ATGCAAAA
          1 ATGCAAAA

       3139 CGAGAAAGTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  17   15  0.68
  18    7  0.32

ACGTcount: A:0.49, C:0.14, G:0.14, T:0.23


Consensus pattern (18 bp):   
ATGCAAAATGCAAACTAT
Done.