Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005329.1 Corchorus capsularis cultivar CVL-1 contig05347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1357
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35


Found at i:771 original size:30 final size:31

Alignment explanation


    Indices: 732--797  Score: 80
    Period size: 30  Copynumber: 2.2  Consensus size: 31

        722 TTTGGCTTTA

                *       *    * *           
        732 ATTTGATGCTTGTTCATTCTGATTTGT-TCG
          1 ATTTAATGCTTGCTCATGCCGATTTGTGTCG

                                         * 
        762 ATTTAATGCTTGCTCATGCCGATTTGTGTTG
          1 ATTTAATGCTTGCTCATGCCGATTTGTGTCG

                 
        793 ATTTA
          1 ATTTA

        798 GTCCCTGTTC


Statistics
Matches: 30,  Mismatches: 5, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  30   23  0.77
  31    7  0.23

ACGTcount: A:0.17, C:0.14, G:0.20, T:0.50


Consensus pattern (31 bp):   
ATTTAATGCTTGCTCATGCCGATTTGTGTCG
Done.