Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000533.1 Corchorus capsularis cultivar CVL-1 contig00533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2945
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:1608 original size:13 final size:13

Alignment explanation


    Indices: 1590--1615  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1580 CTTTTGTCAG

                         
       1590 GTACTATACGAAA
          1 GTACTATACGAAA

                         
       1603 GTACTATACGAAA
          1 GTACTATACGAAA

       1616 TGTTGAACAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23


Consensus pattern (13 bp):   
GTACTATACGAAA

Found at i:2152 original size:13 final size:13

Alignment explanation


    Indices: 2134--2159  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2124 CTTATGCCTA

                         
       2134 AAAATGTCAAAAC
          1 AAAATGTCAAAAC

                         
       2147 AAAATGTCAAAAC
          1 AAAATGTCAAAAC

       2160 CATACGCCTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.62, C:0.15, G:0.08, T:0.15


Consensus pattern (13 bp):   
AAAATGTCAAAAC
Done.