Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005330.1 Corchorus capsularis cultivar CVL-1 contig05348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3213
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36


Found at i:379 original size:51 final size:51

Alignment explanation


    Indices: 212--430  Score: 192
    Period size: 52  Copynumber: 4.2  Consensus size: 51

        202 TTTTAATTCC

                    *        *      * * *        *                
        212 AATTA-TTCAAAGATTTCATCTTTTACTCAAAAGATTTAATCTTTATTTACAAA
          1 AATTACTTAAAAGATTTAATCTTTCAATTAAAA-ATTCAATCTTTATTTAC--A

                 *     *    *       *   *   *      * *          
        265 AATTAATTAAATG-TTCAATCTTTTAATCAAATATTACATTTTTTATTTACA
          1 AATTACTTAAAAGATTTAATCTTTCAATTAAAAATT-CAATCTTTATTTACA

                                          *   *                  
        316 AACTTACTTAAAAG-TTTAATCTTTCAATTGAAAGTTCAATCTTTATTTCACA
          1 AA-TTACTTAAAAGATTTAATCTTTCAATTAAAAATTCAATCTTTATTT-ACA

                  *                   *                   *    
        368 AATTACCTAAAAGATTTAATCTTTCACTTAAAAATTCAATCTTTATATACA
          1 AATTACTTAAAAGATTTAATCTTTCAATTAAAAATTCAATCTTTATTTACA

                        
        419 AATTACTTAAAA
          1 AATTACTTAAAA

        431 ACTTAAACTT


Statistics
Matches: 136,  Mismatches: 25, Indels: 12
        0.79            0.14        0.07

Matches are distributed among these distances:
  51   37  0.27
  52   63  0.46
  53   31  0.23
  54    5  0.04

ACGTcount: A:0.41, C:0.13, G:0.03, T:0.43


Consensus pattern (51 bp):   
AATTACTTAAAAGATTTAATCTTTCAATTAAAAATTCAATCTTTATTTACA
Done.