Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005331.1 Corchorus capsularis cultivar CVL-1 contig05349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2747
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:2155 original size:45 final size:45

Alignment explanation


    Indices: 2104--2193  Score: 144
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       2094 TTAATAGAGT

                                                         
       2104 AGTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTG
          1 AGTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTG

                                    * *  *         *     
       2149 AGTGGAATTACTAAAAGATCCCTATCTCGGATTAATGATGAGCTG
          1 AGTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTG

       2194 GAGAAGTAAT


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  45   41  1.00

ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27


Consensus pattern (45 bp):   
AGTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTG
Done.