Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005332.1 Corchorus capsularis cultivar CVL-1 contig05350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1928
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30


Found at i:962 original size:20 final size:20

Alignment explanation


    Indices: 937--995  Score: 68
    Period size: 20  Copynumber: 3.0  Consensus size: 20

        927 AGATATGTTT

                                
        937 TACTAATAAATAATAATATA
          1 TACTAATAAATAATAATATA

                               *
        957 TACTAATAAAT-A-AATATT
          1 TACTAATAAATAATAATATA

                    * *          
        975 TACTAATTTACTAATAATATA
          1 TACTAA-TAAATAATAATATA

        996 AATATATATT


Statistics
Matches: 32,  Mismatches: 4, Indels: 5
        0.78            0.10        0.12

Matches are distributed among these distances:
  18   11  0.34
  19    4  0.12
  20   12  0.38
  21    5  0.16

ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39


Consensus pattern (20 bp):   
TACTAATAAATAATAATATA
Done.