Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005333.1 Corchorus capsularis cultivar CVL-1 contig05351, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2132
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32


Found at i:1548 original size:6 final size:5

Alignment explanation


    Indices: 1521--1550  Score: 51
    Period size: 5  Copynumber: 5.8  Consensus size: 5

       1511 AGTTGAAATT

                                               
       1521 TTTTA TTTTA TTTTA TTTTA TTTATA TTTT
          1 TTTTA TTTTA TTTTA TTTTA TTT-TA TTTT

       1551 TCGATATAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5   19  0.79
   6    5  0.21

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
TTTTA
Done.