Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005335.1 Corchorus capsularis cultivar CVL-1 contig05353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9526

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58--243
22
8.5
22
70
17
113
41
10
14
32
1.80
58--304
22
11.3
22
69
10
105
41
10
14
33
1.81
412--885
44
10.8
44
70
12
210
38
9
14
37
1.79
581--687
23
4.8
22
80
6
99
39
9
14
37
1.78
500--660
83
1.9
84
81
6
193
43
7
13
35
1.72
580--686
45
2.4
44
81
10
135
39
9
14
37
1.78
412--894
22
22.1
22
68
14
164
38
9
15
36
1.79
867--908
22
1.9
22
85
9
59
54
4
11
28
1.57
2903--3020
56
2.1
57
88
4
177
35
20
22
22
1.96
5778--5834
28
2.0
28
86
6
80
21
15
19
43
1.87
6506--6563
29
2.0
29
93
3
100
43
15
18
22
1.88
8570--8649
23
3.5
23
84
1
99
40
16
7
36
1.77
8584--8751
82
2.0
85
81
7
202
33
17
7
41
1.76
8567--8756
44
4.4
44
72
12
124
34
17
7
39
1.79
8784--8833
19
2.5
20
87
6
75
24
18
12
46
1.82
8940--9128
22
8.6
22
72
8
127
34
14
10
40
1.80
8915--9079
85
1.9
85
80
7
192
33
15
10
40
1.81
8940--9240
22
13.6
22
66
21
64
34
14
9
40
1.79
9204--9254
22
2.3
22
79
0
57
41
17
7
33
1.79

Tables:   1

The End!