Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005337.1 Corchorus capsularis cultivar CVL-1 contig05355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2116
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Found at i:435 original size:26 final size:26

Alignment explanation


    Indices: 395--445  Score: 86
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        385 CCTTGTACGG

                                      
        395 GTCGTACGTGCGAGGTCACGTGTGGA
          1 GTCGTACGTGCGAGGTCACGTGTGGA

                                      
        421 GTCGTACGTTG-GAGGTCACGTGTGG
          1 GTCGTACG-TGCGAGGTCACGTGTGG

        446 GGTGCCAGCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  26   22  0.92
  27    2  0.08

ACGTcount: A:0.14, C:0.18, G:0.43, T:0.25


Consensus pattern (26 bp):   
GTCGTACGTGCGAGGTCACGTGTGGA

Found at i:654 original size:2 final size:2

Alignment explanation


    Indices: 649--674  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        639 TTGAAAAGTT

                                                  
        649 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

        675 AGAACTACAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.