Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005338.1 Corchorus capsularis cultivar CVL-1 contig05356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2330
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35


Found at i:384 original size:2 final size:2

Alignment explanation


    Indices: 377--404  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        367 ATGTTTGATG

                                                     
        377 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        405 CTTTTTATGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:833 original size:45 final size:45

Alignment explanation


    Indices: 782--871  Score: 153
    Period size: 45  Copynumber: 2.0  Consensus size: 45

        772 TAATAGAGTA

                                                         
        782 GTGGAATTACTAAAAGATCCCTACCCCGAATTAATCATAAGCTGG
          1 GTGGAATTACTAAAAGATCCCTACCCCGAATTAATCATAAGCTGG

                                        *      *  *      
        827 GTGGAATTACTAAAAGATCCCTACCCCGGATTAATGATGAGCTGG
          1 GTGGAATTACTAAAAGATCCCTACCCCGAATTAATCATAAGCTGG

        872 AGAAGTAATC


Statistics
Matches: 42,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  45   42  1.00

ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24


Consensus pattern (45 bp):   
GTGGAATTACTAAAAGATCCCTACCCCGAATTAATCATAAGCTGG
Done.