Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000534.1 Corchorus capsularis cultivar CVL-1 contig00534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1946
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30


Found at i:94 original size:27 final size:27

Alignment explanation


    Indices: 49--114  Score: 71
    Period size: 27  Copynumber: 2.4  Consensus size: 27

         39 TCTAGGGAAG

                     *           *     
         49 TAACTTTGAGTGGGAAACTGTTTTAAC
          1 TAACTTTGAATGGGAAACTGTCTTAAC

             *                       *  
         76 TGACTTTGAAT-GGAGAACTGTCTTGAC
          1 TAACTTTGAATGGGA-AACTGTCTTAAC

                  *     
        103 TAACTTGGAATG
          1 TAACTTTGAATG

        115 AGAGTTTGAC


Statistics
Matches: 31,  Mismatches: 6, Indels: 3
        0.77            0.15        0.08

Matches are distributed among these distances:
  26    3  0.10
  27   28  0.90

ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35


Consensus pattern (27 bp):   
TAACTTTGAATGGGAAACTGTCTTAAC
Done.