Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005345.1 Corchorus capsularis cultivar CVL-1 contig05363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9659
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:8469 original size:14 final size:15

Alignment explanation


    Indices: 8445--8473  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       8435 AACAAATTTT

                           
       8445 TAAACAAAAAAATTA
          1 TAAACAAAAAAATTA

                           
       8460 TAAA-AAAAAAATTA
          1 TAAACAAAAAAATTA

       8474 AAAGAGAAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21


Consensus pattern (15 bp):   
TAAACAAAAAAATTA

Found at i:9356 original size:17 final size:19

Alignment explanation


    Indices: 9323--9357  Score: 56
    Period size: 17  Copynumber: 1.9  Consensus size: 19

       9313 ATTTCAAACT

                               
       9323 TTTCAACTCTCTCAAATTC
          1 TTTCAACTCTCTCAAATTC

                              
       9342 TTTCAA-TCT-TCAAATT
          1 TTTCAACTCTCTCAAATT

       9358 TCAAAACTCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    7  0.44
  18    3  0.19
  19    6  0.38

ACGTcount: A:0.29, C:0.26, G:0.00, T:0.46


Consensus pattern (19 bp):   
TTTCAACTCTCTCAAATTC
Done.