Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005347.1 Corchorus capsularis cultivar CVL-1 contig05365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20518

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1085--1311
94
2.4
93
88
1
312
36
12
10
40
1.78
1586--1640
9
6.1
9
82
0
65
16
45
20
18
1.86
5357--5520
75
2.2
75
81
4
197
29
13
16
40
1.87
8751--8785
7
5.0
7
92
0
61
14
25
17
42
1.86
9543--9594
26
2.0
26
81
7
61
51
15
1
30
1.54
10347--10395
3
16.3
3
100
0
98
32
0
0
67
0.91
16270--16313
22
2.0
22
95
0
79
29
9
29
31
1.88
16386--16423
19
2.0
19
90
10
60
26
10
23
39
1.87
16721--16760
20
2.0
21
90
5
64
55
0
2
42
1.13
19580--19646
24
3.0
24
65
14
61
43
23
2
29
1.69
19556--19810
44
5.8
44
80
3
280
36
27
4
32
1.76
19556--19810
89
2.9
87
78
4
287
36
27
4
32
1.76
19711--19787
22
3.5
23
67
15
72
38
27
2
31
1.70
20259--20296
8
4.6
8
90
3
58
36
13
0
50
1.42

Tables:   1

The End!