Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005357.1 Corchorus capsularis cultivar CVL-1 contig05375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10055
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39


Found at i:1602 original size:2 final size:2

Alignment explanation


    Indices: 1595--1621  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       1585 GTAGGTGTTG

                                                    
       1595 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1622 ATTATTGATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:6270 original size:1 final size:1

Alignment explanation


    Indices: 6232--6262  Score: 62
    Period size: 1  Copynumber: 31.0  Consensus size: 1

       6222 GCATGTTGGG

                                           
       6232 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       6263 GAATTTTTAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T
Done.