Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000536.1 Corchorus capsularis cultivar CVL-1 contig00536, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1995
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36


Found at i:1125 original size:16 final size:16

Alignment explanation


    Indices: 1104--1137  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1094 GTGAGGATCA

                            
       1104 ACAAATCGACCCTAAG
          1 ACAAATCGACCCTAAG

                            
       1120 ACAAATCGACCCTAAG
          1 ACAAATCGACCCTAAG

              
       1136 AC
          1 AC

       1138 TAAAGGGGGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.44, C:0.32, G:0.12, T:0.12


Consensus pattern (16 bp):   
ACAAATCGACCCTAAG
Done.