Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005363.1 Corchorus capsularis cultivar CVL-1 contig05381, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:680 original size:23 final size:23

Alignment explanation


    Indices: 650--706  Score: 78
    Period size: 23  Copynumber: 2.5  Consensus size: 23

        640 TCAAATTTGG

                           *       
        650 GATTTTTTTTTCTCTCTCGAAGC
          1 GATTTTTTTTTCTCTATCGAAGC

                       *          *
        673 GATTTTTTTTTGTCTATCGAAGG
          1 GATTTTTTTTTCTCTATCGAAGC

             *         
        696 GTTTTTTTTTT
          1 GATTTTTTTTT

        707 AAAAAAAAAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   30  1.00

ACGTcount: A:0.12, C:0.12, G:0.16, T:0.60


Consensus pattern (23 bp):   
GATTTTTTTTTCTCTATCGAAGC
Done.