Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005366.1 Corchorus capsularis cultivar CVL-1 contig05384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2653
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36


Found at i:1471 original size:31 final size:31

Alignment explanation


    Indices: 1436--1507  Score: 78
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       1426 TACATTGTTG

                            *                
       1436 CAAATTAAAACAAAT-TAAG-CATTAAATTAAA
          1 CAAATTAAAA-AAATGAAAGTC-TTAAATTAAA

                     *                      
       1467 CAAA-TAATTAAAATGAAAGTCTTAAATTAAA
          1 CAAATTAA-AAAAATGAAAGTCTTAAATTAAA

                      
       1498 CAAATTAAAA
          1 CAAATTAAAA

       1508 GTTGATAGAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 8
        0.76            0.07        0.18

Matches are distributed among these distances:
  30    7  0.21
  31   23  0.68
  32    4  0.12

ACGTcount: A:0.61, C:0.08, G:0.04, T:0.26


Consensus pattern (31 bp):   
CAAATTAAAAAAATGAAAGTCTTAAATTAAA

Found at i:1696 original size:15 final size:15

Alignment explanation


    Indices: 1676--1704  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1666 ATTTCATGTA

                           
       1676 TTTAATTAGTTATAC
          1 TTTAATTAGTTATAC

                          
       1691 TTTAATTAGTTATA
          1 TTTAATTAGTTATA

       1705 AGGGTACTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.34, C:0.03, G:0.07, T:0.55


Consensus pattern (15 bp):   
TTTAATTAGTTATAC
Done.